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Survival-associated eQTLs across different cancer types


We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "STAD"
e.g., "rs1824937"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LIHC rs10213518 chr4:44708093 C/G 2.05E-5 192 4.57 13.53 16.07 KM Plot
LIHC rs10219716 chr12:112503474 T/A 0.000428 190 13.57 13.93 2.9 KM Plot
LIHC rs10220828 chr15:88974627 C/T 2.53E-9 192 0.63 14.9 13.15 KM Plot
LIHC rs10231541 chr7:154854470 C/T 0.000215 191 14.07 3.87 16.07 KM Plot
LIHC rs10231654 chr7:154854558 C/T 6.05E-5 192 14.1 3.87 16.07 KM Plot
LIHC rs10285 chr3:10321517 G/A 1.84E-5 192 13.72 13.53 0.2 KM Plot
LIHC rs10425939 chr19:17397244 C/T 0.000439 182 13.17 14.18 2.23 KM Plot
LIHC rs10495219 chr1:224606249 C/G 0.000103 190 13.55 13.37 5.25 KM Plot
LIHC rs10503761 chr8:24357466 A/T 2.25E-9 192 0.63 14.03 13.08 KM Plot
LIHC rs10517120 chr4:44859761 C/T 0.000144 190 13.97 13.57 7.17 KM Plot
LIHC rs1054439 chr3:125431505 A/C 0 188 13.78 12.03 0.75 KM Plot
LIHC rs1060382 chr7:64434878 C/T 4.0E-12 192 1.77 5.7 13.97 KM Plot
LIHC rs10611538 chr3:112327969 ATTC/A 0.000311 189 13.57 12 3.43 KM Plot
LIHC rs10615900 chr7:64435678 TAC/T 4.0E-12 192 1.77 5.7 13.97 KM Plot
LIHC rs10648879 chr12:112297457 T/TTTTC 6.38E-6 192 12.57 14.98 4.03 KM Plot